Index

A

ABC() (in module cmpy.machines.processes.alternatingbiasedcoins) abstract_method() (in module cmpy.util.misc) add() (in module cmpy.simplex.aitchison) add_accept_node() (cmpy.machines.dfa.DFA method) add_edge() (cmpy.machines.base.BaseMachine method) add_edges_from() (cmpy.machines.base.BaseMachine method) add_level() (in module cmpy.machines.algorithms.mealysr) add_node() (cmpy.machines.base.BaseMachine method) add_nodes_from() (cmpy.machines.base.BaseMachine method) add_probs() (cmpy.infotheory.distributions.LogDistribution static method) (cmpy.infotheory.distributions.SymbolicDistribution static method) add_transitions() (in module cmpy.machines.algorithms.mealypm) adjacency_matrix() (cmpy.machines.base.BaseMachine method) aliasdict1 (class in cmpy.util.subdict) aliasdict2 (class in cmpy.util.subdict) allclose() (in module cmpy.math.equal) allowable_words() (cmpy.machines.mealyhmm.MealyHMM method) (cmpy.util.parsetree.MachineWordListGenerator method) alphabet() (cmpy.machines.dfa.DFA method) (cmpy.machines.hmm.HMM method) (cmpy.machines.mealyhmm.MealyHMM method) (cmpy.machines.moorehmm.MooreHMM method) (cmpy.machines.simplemoorehmm.MooreHMM method) alphabet_by_node() (cmpy.machines.dfa.DFA method) AlphabetException

alphabets() (cmpy.machines.mealytransducer.MealyTransducer method) alr() (in module cmpy.simplex.aitchison) alr_inv() (in module cmpy.simplex.aitchison) AnnealingRateUnderflow append() (cmpy.util.deque.finite_deque method) appendleft() (cmpy.util.deque.finite_deque method) args (cmpy.external.decorator.partial attribute) array() (cmpy.infotheory.conditional_distributions.ConditionalSymbolicDistribution method) assert_almost_equal_array() (in module cmpy.simplex.tests.test_aitchison) assert_equal_shape() (in module cmpy.simplex.tests.test_aitchison) attr_matrix() (in module cmpy.machines.algorithms.attrmatrix) attr_sparse_matrix() (in module cmpy.machines.algorithms.attrmatrix) attracting_components() (cmpy.machines.base.BaseMachine method) attracting_nodes() (cmpy.machines.base.BaseMachine method) AttrException augment() (cmpy.orderlygen.old.read1.EdgeAddition method) (cmpy.orderlygen.old.read1.EdgeDeletion method) (cmpy.orderlygen.old.read1.OrderlyGenerator method) (in module cmpy.orderlygen.old.enumerate_machines) (in module cmpy.orderlygen.old.read1) averaged_distribution() (cmpy.machines.mealyhmm.MealyHMM method) averaged_entropy() (cmpy.machines.mealyhmm.MealyHMM method)

B

B() (in module cmpy.orderlygen.old.icdfa) (in module cmpy.orderlygen.pyicdfa) backtrack() (cmpy.util.parsetree.DFS method) backward_logprobability__dense() (in module cmpy.machines.algorithms.mealybprob) backward_logprobability__machine() (in module cmpy.machines.algorithms.mealybprob) backward_probabilities_iter() (in module cmpy.machines.algorithms.mealybprob) backward_probability__dense() (in module cmpy.machines.algorithms.mealybprob) backward_probability__machine() (in module cmpy.machines.algorithms.mealybprob) BandMerging() (in module cmpy.machines.processes.bandmerging) BaseEpsilonMachine (class in cmpy.machines.epsilonmachine) baseevent1 (cmpy.infotheory.tests.test_events.TestBaseEvent attribute) baseevent2 (cmpy.infotheory.tests.test_events.TestBaseEvent attribute) baseevent3 (cmpy.infotheory.tests.test_events.TestBaseEvent attribute) BaseMachine (class in cmpy.machines.base) BaseMixedState (class in cmpy.machines.algorithms.mealyms) basis() (in module cmpy.simplex.aitchison) BeadsOnNecklace() (in module cmpy.machines.processes.beadsonnecklace) BeadsOnNecklace2() (in module cmpy.machines.processes.beadsonnecklace) BeforeAfter() (in module cmpy.machines.processes.beforeafter) BFS (class in cmpy.util.parsetree) BiasedCoin() (in module cmpy.machines.processes.coin)

bicausal_distribution() (in module cmpy.machines.algorithms.mealyee) BidirectionalMachine (class in cmpy.machines.algorithms.mealyms) BinaryChannel() (in module cmpy.machines.processes.transducers) BitFlip() (in module cmpy.machines.processes.transducers) block_entropies() (cmpy.machines.algorithms.mealybe.DynamicBlockEntropies method) (cmpy.machines.mealyhmm.MealyHMM method) (in module cmpy.machines.algorithms.mealybe) (in module cmpy.machines.algorithms.mealymsbe) block_entropies_markov() (in module cmpy.machines.algorithms.mealybe) block_entropy_asymptote() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) block_entropy_from_types() (in module cmpy.machines.algorithms.typeclass) block_entropy_integral() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) blockstate_entropy() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) blockstate_entropy_asymptote() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) blockstate_entropy_integral() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) build_bimachine() (in module cmpy.machines.algorithms.mealyms) build_eM() (in module cmpy.machines.algorithms.mealyeM) build_MealyPM() (in module cmpy.machines.algorithms.mealypm) build_msp() (cmpy.machines.algorithms.mealyms.MSPBuilderBase method) (in module cmpy.machines.algorithms.mealyms) build_msp_iter() (cmpy.machines.algorithms.mealyms.MSPBuilderBase method) build_pa() (in module cmpy.machines.algorithms.mealysw) Butterfly() (in module cmpy.machines.processes.butterfly)

C

calculate() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) Cantor() (in module cmpy.machines.processes.cantor) cartesian_product_gg() (in module cmpy.machines.algorithms.mealycompose) cartesian_product_tt() (in module cmpy.machines.algorithms.mealycompose) causal_state() (cmpy.machines.epsilonmachine.EpsilonMachine method) CausalStateChanged CausalStateUnchanged channel_capacity() (in module cmpy.information.information) (in module cmpy.infotheory.infotheory) channel_YZ() (in module cmpy.infotheory.conditional_distributions) check_getitem() (in module cmpy.infotheory.tests.test_distributions) check_networkx() (in module cmpy.initmisc) check_permutations() (in module cmpy.orderlygen.old.enumerate_machines) check_python() (in module cmpy.initmisc) cleaned_node() (in module cmpy.drawing.graphviz) clear() (cmpy.util.subdict.indexdict method) clear_cache() (in module cmpy.util.memoize) close() (in module cmpy.math.equal) closure() (in module cmpy.simplex.aitchison) clr() (in module cmpy.simplex.aitchison) clr_inv() (in module cmpy.simplex.aitchison) cmech_quantities() (cmpy.machines.mealyhmm.MealyHMM method) CMechQuantities (class in cmpy.machines.algorithms.mealycmech) cmp_macroprob1() (cmpy.machines.algorithms.typeclass.TypeClass static method) cmp_macroprob2() (cmpy.machines.algorithms.typeclass.TypeClass static method) cmp_microprob() (cmpy.machines.algorithms.typeclass.TypeClass static method) cmp_multiplicity() (cmpy.machines.algorithms.typeclass.TypeClass static method) cmpy.drawing.graphviz (module) cmpy.exceptions (module) cmpy.external.decorator (module) cmpy.external.pkg_resources (module) cmpy.inference.bayesianmc (module) cmpy.information.exceptions (module) cmpy.information.information (module) cmpy.information.misc (module) cmpy.infotheory.conditional_distributions (module) cmpy.infotheory.convert (module) cmpy.infotheory.distributions (module) cmpy.infotheory.events (module) cmpy.infotheory.exceptions (module) cmpy.infotheory.infotheory (module) cmpy.infotheory.memory (module) cmpy.infotheory.quantities (module) cmpy.infotheory.tests.test_conditional_distributions (module) cmpy.infotheory.tests.test_convert (module) cmpy.infotheory.tests.test_distributions (module) cmpy.infotheory.tests.test_dists_infotheory (module) cmpy.infotheory.tests.test_events (module) cmpy.infotheory.tests.test_information (module) cmpy.infotheory.tests.test_memory (module) cmpy.initmisc (module) cmpy.latex.blockentropy (module) cmpy.machines.algorithms.attrmatrix (module) cmpy.machines.algorithms.convert (module) cmpy.machines.algorithms.dfaminimize (module) cmpy.machines.algorithms.emco (module) cmpy.machines.algorithms.emmo (module) cmpy.machines.algorithms.entropyfp (module) cmpy.machines.algorithms.mealybe (module) cmpy.machines.algorithms.mealybprob (module) cmpy.machines.algorithms.mealycmech (module) cmpy.machines.algorithms.mealycompose (module) cmpy.machines.algorithms.mealyee (module) cmpy.machines.algorithms.mealyeM (module) cmpy.machines.algorithms.mealyfprob (module) cmpy.machines.algorithms.mealyiso (module) cmpy.machines.algorithms.mealyms (module) cmpy.machines.algorithms.mealymsbe (module) cmpy.machines.algorithms.mealypm (module) cmpy.machines.algorithms.mealysr (module) cmpy.machines.algorithms.mealysw (module) cmpy.machines.algorithms.mealytfa (module) cmpy.machines.algorithms.mealywords (module) cmpy.machines.algorithms.sofic (module) cmpy.machines.algorithms.tests.test_emco (module) cmpy.machines.algorithms.tests.test_emmo (module) cmpy.machines.algorithms.tests.test_mealybe (module) cmpy.machines.algorithms.tests.test_mealyiso (module) cmpy.machines.algorithms.tests.test_mealysw (module) cmpy.machines.algorithms.typeclass (module) cmpy.machines.base (module) cmpy.machines.convert (module) cmpy.machines.dfa (module) cmpy.machines.epsilonmachine (module) cmpy.machines.hmm (module) cmpy.machines.label (module) cmpy.machines.libraries.metalibrary (module) cmpy.machines.libraries.tremup.haskell (module) cmpy.machines.libraries.tremup.misc (module) cmpy.machines.mealyhmm (module) cmpy.machines.mealytransducer (module) cmpy.machines.misc (module) cmpy.machines.moorehmm (module) cmpy.machines.processes.alternatingbiasedcoins (module) cmpy.machines.processes.analyticeven (module) cmpy.machines.processes.bandmerging (module) cmpy.machines.processes.beadsonnecklace (module) cmpy.machines.processes.beforeafter (module) cmpy.machines.processes.butterfly (module) cmpy.machines.processes.cantor (module) cmpy.machines.processes.coin (module) cmpy.machines.processes.cyclic (module) cmpy.machines.processes.even (module) cmpy.machines.processes.flower (module) cmpy.machines.processes.goldenmean (module) cmpy.machines.processes.irrev (module) cmpy.machines.processes.logic (module) cmpy.machines.processes.misiurewicz (module) cmpy.machines.processes.multiple (module) cmpy.machines.processes.nemo (module) cmpy.machines.processes.noisyp2 (module) cmpy.machines.processes.nrps (module)

cmpy.machines.processes.odd (module) cmpy.machines.processes.period (module) cmpy.machines.processes.random (module) cmpy.machines.processes.rip (module) cmpy.machines.processes.rn1c (module) cmpy.machines.processes.rn1n (module) cmpy.machines.processes.rotation (module) cmpy.machines.processes.rrx (module) cmpy.machines.processes.rrxro (module) cmpy.machines.processes.sns (module) cmpy.machines.processes.threehundred (module) cmpy.machines.processes.transducers (module) cmpy.machines.simplemoorehmm (module) cmpy.machines.stochasticmachine (module) cmpy.machines.tests.test_base (module) cmpy.machines.tests.test_epsilonmachine (module) cmpy.machines.tests.test_hmm (module) cmpy.machines.tests.test_label (module) cmpy.machines.tests.test_mealyhmm (module) cmpy.machines.tests.test_moorehmm (module) cmpy.machines.tests.test_stochasticmachine (module) cmpy.machines.transducer (module) cmpy.machines.transform (module) cmpy.math.equal (module) cmpy.math.logarithms (module) cmpy.math.misc (module) cmpy.math.sampling (module) cmpy.math.sigmaalgebra (module) cmpy.math.tests.test_misc (module) cmpy.math.tests.test_sigmaalgebra (module) cmpy.orderlygen.icdfa (module) cmpy.orderlygen.old.enumerate_machines (module) cmpy.orderlygen.old.generator (module) cmpy.orderlygen.old.icdfa (module) cmpy.orderlygen.old.read1 (module) cmpy.orderlygen.pyicdfa (module) cmpy.params (module) cmpy.simplex.aitchison (module) cmpy.simplex.grid (module) cmpy.simplex.sampling (module) cmpy.simplex.tests.test_aitchison (module) cmpy.testing.misc (module) cmpy.util.combinatorics (module) cmpy.util.deque (module) cmpy.util.kddict (module) cmpy.util.memoize (module) cmpy.util.misc (module) cmpy.util.parsetree (module) cmpy.util.period (module) cmpy.util.segmentaxis (module) cmpy.util.sequences (module) cmpy.util.subdict (module) cmpy.util.tests.test_subdict (module) cmpy_equal() (in module cmpy.math.equal) CMPyError CMPyException CMPyStop code() (in module cmpy.orderlygen.old.enumerate_machines) code2graph() (cmpy.orderlygen.old.read1.Graph method) (cmpy.orderlygen.old.read1.GraphSelfLoop method) (cmpy.orderlygen.old.read1.OrderlyGenerator method) code_generator() (cmpy.orderlygen.old.read1.EdgeAddition method) (cmpy.orderlygen.old.read1.EdgeDeletion method) (cmpy.orderlygen.old.read1.OrderlyGenerator method) combinations (class in cmpy.util.combinatorics) complement() (cmpy.machines.dfa.DFA method) complete() (cmpy.machines.dfa.DFA method) (cmpy.machines.mealytransducer.MealyTransducer method) compose_tg() (in module cmpy.machines.algorithms.mealycompose) compose_tt() (in module cmpy.machines.algorithms.mealycompose) compute_alpha() (in module cmpy.machines.algorithms.mealysr) compute_sync_rate() (in module cmpy.machines.algorithms.mealysr) condblock_entropies() (cmpy.machines.algorithms.mealybe.DynamicBlockEntropies method) (in module cmpy.machines.algorithms.mealybe) conditional_distribution() (in module cmpy.information.information) conditional_entropy() (in module cmpy.information.information) (in module cmpy.infotheory.infotheory) conditional_entropy_from_conditional() (in module cmpy.information.information) conditional_entropy_log() (in module cmpy.infotheory.infotheory) conditional_entropy_mc() (in module cmpy.infotheory.infotheory) conditional_entropy_mc_log() (in module cmpy.infotheory.infotheory) conditional_entropy_mc_symbolic() (in module cmpy.infotheory.infotheory) conditional_entropy_symbolic() (in module cmpy.infotheory.infotheory) conditional_probabilities() (cmpy.machines.hmm.HMM method) conditional_probability() (cmpy.machines.hmm.HMM method) ConditionalDistribution (class in cmpy.infotheory.conditional_distributions) ConditionalLogDistribution (class in cmpy.infotheory.conditional_distributions) ConditionalSymbolicDistribution (class in cmpy.infotheory.conditional_distributions) construct_possibility_machine() (in module cmpy.machines.algorithms.mealysr) convert_distribution() (in module cmpy.information.misc) Convert_HMMMatrixForm_to_HMMListForm() (in module cmpy.machines.algorithms.mealytfa) convert_into_joint_distribution() (in module cmpy.information.information) convert_symbols_to_integers() (in module cmpy.machines.convert) copy() (cmpy.machines.algorithms.mealyms.BaseMixedState method) (cmpy.util.subdict.aliasdict1 method) (cmpy.util.subdict.aliasdict2 method) (cmpy.util.subdict.indexdict method) CoupledGMPs() (in module cmpy.machines.processes.goldenmean) covering() (cmpy.machines.algorithms.mealyms.BaseMixedState method) create() (cmpy.external.decorator.FunctionMaker class method) create_biased_coins() (in module cmpy.infotheory.tests.test_distributions) (in module cmpy.infotheory.tests.test_dists_infotheory) create_biased_log_coins() (in module cmpy.infotheory.tests.test_distributions) (in module cmpy.infotheory.tests.test_dists_infotheory) create_even_words() (in module cmpy.infotheory.tests.test_dists_infotheory) create_gm_words() (in module cmpy.infotheory.tests.test_dists_infotheory) create_iid_words() (in module cmpy.infotheory.tests.test_dists_infotheory) create_integer_coins() (in module cmpy.infotheory.tests.test_distributions) create_lists() (cmpy.util.parsetree.MachineWordListGenerator method) create_symbolic_coins() (in module cmpy.infotheory.tests.test_conditional_distributions) (in module cmpy.infotheory.tests.test_distributions) (in module cmpy.infotheory.tests.test_dists_infotheory) create_symbolic_correlated_coins() (in module cmpy.infotheory.tests.test_dists_infotheory) create_unbiased_coins() (in module cmpy.infotheory.tests.test_conditional_distributions) (in module cmpy.infotheory.tests.test_distributions) (in module cmpy.infotheory.tests.test_dists_infotheory) create_unbiased_log_coins() (in module cmpy.infotheory.tests.test_conditional_distributions) (in module cmpy.infotheory.tests.test_distributions) (in module cmpy.infotheory.tests.test_dists_infotheory) cross_entropy() (in module cmpy.infotheory.infotheory) cross_entropy_log() (in module cmpy.infotheory.infotheory) cross_entropy_symbolic() (in module cmpy.infotheory.infotheory) cryptic_order() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) (cmpy.machines.mealyhmm.MealyHMM method) (in module cmpy.machines.algorithms.emco) crypticity() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) current_mixedstate_entropy() (cmpy.machines.algorithms.mealybe.DynamicBlockEntropies method) custom_close() (in module cmpy.machines.algorithms.mealyms) CustomDFA (class in cmpy.orderlygen.old.generator) CyclicBranching() (in module cmpy.machines.processes.cyclic)

D

decorator() (in module cmpy.external.decorator) default_opener() (in module cmpy.util.misc) degrees() (cmpy.orderlygen.old.read1.Graph method) (cmpy.orderlygen.old.read1.GraphSelfLoop method) (in module cmpy.orderlygen.old.read1) delalias() (cmpy.util.subdict.aliasdict1 method) (cmpy.util.subdict.aliasdict2 method) Delay() (in module cmpy.machines.processes.transducers) delta() (cmpy.machines.dfa.DFA method) (cmpy.machines.mealyhmm.MealyHMM method) deprecate (class in cmpy.util.misc) deprecated() (in module cmpy.external.decorator) deque_old() (in module cmpy.util.deque) DFA (class in cmpy.machines.dfa) DFA_from_MealyHMM() (in module cmpy.machines.algorithms.convert) DFS (class in cmpy.util.parsetree)

DiGraph (class in cmpy.orderlygen.old.read1) DiGraphSelfLoop (class in cmpy.orderlygen.old.read1) dist() (in module cmpy.simplex.aitchison) Distribution (class in cmpy.infotheory.distributions) distribution() (cmpy.machines.stochasticmachine.StochasticMachine method) distribution_from_conditional() (in module cmpy.information.information) DistributionDict (class in cmpy.information.misc) distributions() (cmpy.machines.stochasticmachine.StochasticMachine method) distributions_iter() (cmpy.machines.mealyhmm.MealyHMM method) (cmpy.machines.moorehmm.MooreHMM method) (cmpy.machines.simplemoorehmm.MooreHMM method) (cmpy.machines.stochasticmachine.StochasticMachine method) draw() (cmpy.machines.base.BaseMachine method) draw_graphviz() (in module cmpy.drawing.graphviz) DynamicBlockEntropies (class in cmpy.machines.algorithms.mealybe)

E

edge() (cmpy.orderlygen.old.read1.Graph method) (cmpy.orderlygen.old.read1.GraphSelfLoop method) (in module cmpy.orderlygen.old.read1) edge_attr_aliases (cmpy.machines.base.BaseMachine attribute) (cmpy.machines.dfa.DFA attribute) (cmpy.machines.mealyhmm.MealyHMM attribute) (cmpy.machines.moorehmm.MooreHMM attribute) (cmpy.machines.simplemoorehmm.MooreHMM attribute) (cmpy.machines.transducer.Transducer attribute) edge_attr_required (cmpy.machines.base.BaseMachine attribute) (cmpy.machines.dfa.DFA attribute) (cmpy.machines.mealyhmm.MealyHMM attribute) (cmpy.machines.moorehmm.MooreHMM attribute) (cmpy.machines.simplemoorehmm.MooreHMM attribute) (cmpy.machines.transducer.Transducer attribute) edge_label() (in module cmpy.machines.label) edge_machine() (in module cmpy.machines.transform) EdgeAddition (class in cmpy.orderlygen.old.read1) EdgeDeletion (class in cmpy.orderlygen.old.read1) emission_matrix() (cmpy.machines.mealyhmm.MealyHMM method) entropy() (cmpy.information.misc.DistributionDict method) (in module cmpy.information.information) (in module cmpy.infotheory.infotheory) entropy_gain() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) entropy_log() (in module cmpy.infotheory.infotheory) entropy_rate() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) (cmpy.machines.hmm.HMM method) (cmpy.machines.mealyhmm.MealyHMM method) entropy_rate_estimates() (cmpy.machines.hmm.HMM method) entropy_symbolic() (in module cmpy.infotheory.infotheory) entropyfp_iter() (in module cmpy.machines.algorithms.entropyfp) EpsilonMachine (class in cmpy.machines.epsilonmachine)

esimplex_gridsample() (in module cmpy.simplex.grid) Even() (in module cmpy.machines.processes.even) EvenAnalytic() (in module cmpy.machines.processes.analyticeven) EvenOdd() (in module cmpy.machines.processes.odd) EvenRedundant() (in module cmpy.machines.processes.even) Event (class in cmpy.infotheory.events) exactly_sync() (in module cmpy.machines.algorithms.mealysw) example_1p1() (in module cmpy.infotheory.memory) Exceeded excess_entropy() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) (cmpy.machines.hmm.HMM method) (cmpy.machines.mealyhmm.MealyHMM method) (in module cmpy.machines.algorithms.mealyee) excess_entropy_bounds() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) excess_entropy_exact() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) excess_entropy_lower() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) excess_entropy_upper() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) extend() (cmpy.util.deque.finite_deque method) extendleft() (cmpy.util.deque.finite_deque method)

F

FairCoin() (in module cmpy.machines.processes.coin) finite_deque (class in cmpy.util.deque) flag_value() (in module cmpy.orderlygen.old.generator) flatten() (cmpy.util.parsetree.MachineWordListGenerator method) (in module cmpy.util.combinatorics) FlipEveryOther() (in module cmpy.machines.processes.transducers) Flower() (in module cmpy.machines.processes.flower) forbidden_words() (cmpy.util.parsetree.MachineWordListGenerator method) ForbiddenWord forward_logprobability__dense() (in module cmpy.machines.algorithms.mealyfprob) forward_logprobability__machine() (in module cmpy.machines.algorithms.mealyfprob)

forward_probabilities_iter() (in module cmpy.machines.algorithms.mealyfprob) forward_probability__dense() (in module cmpy.machines.algorithms.mealyfprob) forward_probability__machine() (in module cmpy.machines.algorithms.mealyfprob) FoundBestNumberOfClusters from_distribution() (in module cmpy.machines.convert) from_matrices() (in module cmpy.machines.convert) from_string() (in module cmpy.machines.convert) func (cmpy.external.decorator.partial attribute) FunctionMaker (class in cmpy.external.decorator)

G

gauge_information() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) GeneralizedDistribution (class in cmpy.infotheory.distributions) generate_word_list() (cmpy.util.parsetree.MachineWordListGenerator method) generated_information() (cmpy.infotheory.memory.Model method) generated_state_information() (cmpy.infotheory.memory.Model method) generator() (in module cmpy.orderlygen.old.generator) get() (cmpy.util.subdict.aliasdict1 method) get_accept_nodes() (cmpy.machines.dfa.DFA method) (cmpy.orderlygen.old.generator.CustomDFA method) get_bprob_func() (in module cmpy.machines.algorithms.mealybprob) get_current_distribution() (cmpy.machines.stochasticmachine.StochasticMachine method) get_current_node() (cmpy.machines.stochasticmachine.StochasticMachine method) get_fobj() (in module cmpy.util.misc) get_fprob_func() (in module cmpy.machines.algorithms.mealyfprob) get_ICDFA() (in module cmpy.orderlygen.icdfa) get_index() (in module cmpy.machines.algorithms.mealysr) get_labelstyle() (in module cmpy.drawing.graphviz) get_name() (cmpy.machines.base.BaseMachine method) get_next_state() (in module cmpy.machines.algorithms.mealysr) get_start_distribution() (cmpy.machines.stochasticmachine.StochasticMachine method)

get_start_node() (cmpy.machines.base.BaseMachine method) get_sync_mode() (cmpy.machines.stochasticmachine.StochasticMachine method) get_transition() (in module cmpy.machines.algorithms.mealytfa) getinfo() (in module cmpy.external.decorator) GMtoEven() (in module cmpy.machines.processes.transducers) GoldenMean() (in module cmpy.machines.processes.goldenmean) GoldenMeanGHMM() (in module cmpy.machines.processes.goldenmean) Graph (class in cmpy.orderlygen.old.read1) graph2code() (cmpy.orderlygen.old.read1.Graph method) (cmpy.orderlygen.old.read1.GraphSelfLoop method) (cmpy.orderlygen.old.read1.OrderlyGenerator method) graph_attr_aliases (cmpy.machines.base.BaseMachine attribute) (cmpy.machines.dfa.DFA attribute) (cmpy.machines.mealyhmm.MealyHMM attribute) (cmpy.machines.moorehmm.MooreHMM attribute) (cmpy.machines.simplemoorehmm.MooreHMM attribute) (cmpy.machines.transducer.Transducer attribute) graph_attr_required (cmpy.machines.base.BaseMachine attribute) (cmpy.machines.dfa.DFA attribute) (cmpy.machines.mealyhmm.MealyHMM attribute) (cmpy.machines.moorehmm.MooreHMM attribute) (cmpy.machines.simplemoorehmm.MooreHMM attribute) (cmpy.machines.transducer.Transducer attribute) graph_generator() (cmpy.orderlygen.old.read1.OrderlyGenerator method) graph_iter() (in module cmpy.orderlygen.old.read1) graph_iter__brute() (in module cmpy.orderlygen.old.read1) GraphConnected (class in cmpy.orderlygen.old.read1) GraphConnectedSelfLoop (class in cmpy.orderlygen.old.read1) GraphSelfLoop (class in cmpy.orderlygen.old.read1) graphviz_escaped() (in module cmpy.drawing.graphviz) group_nodes() (cmpy.machines.mealyhmm.MealyHMM method)

H

H() (in module cmpy.infotheory.infotheory) haskell_machine() (in module cmpy.machines.libraries.tremup.haskell)

HMM (class in cmpy.machines.hmm) hmuL() (cmpy.machines.algorithms.mealycmech.CMechQuantities method)

I

ICDFA (in module cmpy.orderlygen.icdfa) icdfa_to_int() (in module cmpy.orderlygen.old.icdfa) (in module cmpy.orderlygen.pyicdfa) icdfa_to_machine() (in module cmpy.orderlygen.pyicdfa) ifw() (cmpy.util.parsetree.MachineWordListGenerator method) ifw_iter() (cmpy.util.parsetree.MachineWordListGenerator method) IID() (in module cmpy.machines.processes.coin) ilr() (in module cmpy.simplex.aitchison) ilr_inv() (in module cmpy.simplex.aitchison) index() (cmpy.util.subdict.indexdict method) indexdict (class in cmpy.util.subdict) InfiniteRelativeEntropy, [1] info() (cmpy.machines.hmm.HMM method) InfoTheoryException init_distltm() (in module cmpy.machines.algorithms.mealyfprob) InitializationError inner() (in module cmpy.simplex.aitchison) input_alphabet() (cmpy.machines.mealytransducer.MealyTransducer method) (cmpy.machines.transducer.Transducer method) input_machine() (cmpy.machines.mealytransducer.MealyTransducer method) (cmpy.machines.transducer.Transducer method) int_to_icdfa() (in module cmpy.orderlygen.old.icdfa) (in module cmpy.orderlygen.pyicdfa) int_to_machine() (in module cmpy.orderlygen.pyicdfa) internal_markov_chain() (in module cmpy.machines.transform) intersection() (cmpy.machines.dfa.DFA method) InvalidDistribution, [1], [2] InvalidEdgeError InvalidKeywords InvalidOrdering InvalidProbability, [1], [2] InvalidProbabilitySum invert_prob() (cmpy.infotheory.distributions.LogDistribution static method) invertibility() (cmpy.machines.mealytransducer.MealyTransducer method) invertibility_test_graph() (cmpy.machines.mealytransducer.MealyTransducer method) irreducible_forbidden_words() (cmpy.util.parsetree.MachineWordListGenerator method) IrreversibleTwoState() (in module cmpy.machines.processes.irrev)

is_asymptotic_sync() (cmpy.machines.mealyhmm.MealyHMM method) (in module cmpy.machines.algorithms.mealytfa) is_canonical() (cmpy.orderlygen.old.read1.Graph method) (cmpy.orderlygen.old.read1.GraphConnected method) (cmpy.orderlygen.old.read1.OrderlyGenerator method) (in module cmpy.orderlygen.old.generator) (in module cmpy.orderlygen.old.read1) is_complete() (cmpy.machines.mealytransducer.MealyTransducer method) is_counifilar() (cmpy.machines.mealyhmm.MealyHMM method) is_detailed_balance() (cmpy.machines.mealyhmm.MealyHMM method) is_deterministic() (cmpy.machines.dfa.DFA method) is_empty() (cmpy.machines.dfa.DFA method) is_equal_process() (cmpy.machines.mealyhmm.MealyHMM method) is_equivalent() (cmpy.machines.dfa.DFA method) is_ergodic() (cmpy.machines.mealyhmm.MealyHMM method) is_exact_sync() (in module cmpy.machines.algorithms.mealytfa) is_exactly_sync() (cmpy.machines.mealyhmm.MealyHMM method) is_forbidden() (in module cmpy.math.misc) is_full() (in module cmpy.orderlygen.old.generator) is_irreducible() (cmpy.machines.base.BaseMachine method) (cmpy.machines.stochasticmachine.StochasticMachine method) is_isomorphic() (cmpy.machines.dfa.DFA method) (cmpy.machines.mealyhmm.MealyHMM method) (in module cmpy.machines.algorithms.mealyiso) is_log() (cmpy.machines.algorithms.mealyms.BaseMixedState method) is_markov() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) is_minimal() (cmpy.machines.dfa.DFA method) (cmpy.machines.mealyhmm.MealyHMM method) (in module cmpy.machines.algorithms.dfaminimize) (in module cmpy.machines.algorithms.mealytfa) (in module cmpy.orderlygen.old.generator) is_minimal_unifilar() (cmpy.machines.epsilonmachine.RecurrentEpsilonMachine method) (cmpy.machines.mealyhmm.MealyHMM method) is_periodic() (cmpy.machines.mealyhmm.MealyHMM method) is_prescient() (cmpy.infotheory.memory.Model method) is_reversible() (cmpy.machines.mealyhmm.MealyHMM method) is_sigma_algebra() (in module cmpy.math.sigmaalgebra) is_stationary() (cmpy.machines.mealyhmm.MealyHMM method) is_strictly_sofic() (cmpy.machines.mealyhmm.MealyHMM method) (in module cmpy.machines.algorithms.sofic) is_string_like() (in module cmpy.util.misc) is_strongly_connected() (in module cmpy.orderlygen.old.enumerate_machines) is_subset() (cmpy.machines.dfa.DFA method) is_unifilar() (cmpy.machines.dfa.DFA method) (cmpy.machines.mealyhmm.MealyHMM method) is_valid() (cmpy.information.misc.DistributionDict method) is_valid_flag() (in module cmpy.orderlygen.pyicdfa) is_valid_string() (in module cmpy.orderlygen.pyicdfa)

J

joint_distribution_from_conditional() (in module cmpy.information.information) joint_machine() (cmpy.machines.mealytransducer.MealyTransducer method)

JointEvent (class in cmpy.infotheory.events)

K

key_defaultdict (class in cmpy.util.kddict) keymode_defaultdict (class in cmpy.util.kddict)

keywords (cmpy.external.decorator.partial attribute) kullback_leibler_distance() (in module cmpy.information.information)

L

label_nodes() (cmpy.machines.algorithms.mealyms.MSPBuilderBase method) labeled_transition_matrices() (cmpy.machines.algorithms.mealyms.BidirectionalMachine method) (cmpy.machines.mealyhmm.MealyHMM method) (cmpy.machines.mealytransducer.MealyTransducer method) language_iter() (in module cmpy.machines.algorithms.mealywords) len_cmp() (in module cmpy.util.misc) length (cmpy.machines.algorithms.typeclass.TypeClass attribute) library() (in module cmpy.machines.libraries.metalibrary) log_distribution (cmpy.information.misc.DistributionDict attribute) LogDistribution (class in cmpy.infotheory.distributions) logdotexp() (in module cmpy.math.logarithms)

logdotexp2() (in module cmpy.math.logarithms) LogicMachine() (in module cmpy.machines.processes.logic) LogMixedState (class in cmpy.machines.algorithms.mealyms) logprobability__numpy() (in module cmpy.machines.algorithms.mealyfprob) logprobability__numpy2() (in module cmpy.machines.algorithms.mealyfprob) logsum() (in module cmpy.math.logarithms) logsum2() (in module cmpy.math.logarithms) LostCluster

M

machine_to_icdfa() (in module cmpy.orderlygen.pyicdfa) machine_to_icdfas_iter() (in module cmpy.orderlygen.pyicdfa) machine_to_int() (in module cmpy.orderlygen.pyicdfa) machine_to_ints_iter() (in module cmpy.orderlygen.pyicdfa) machines() (in module cmpy.machines.libraries.tremup.haskell) MachineWordListGenerator (class in cmpy.util.parsetree) main() (in module cmpy.orderlygen.old.enumerate_machines) (in module cmpy.orderlygen.old.generator) make() (cmpy.external.decorator.FunctionMaker method) marginal_distribution() (in module cmpy.information.information) marginal_machine() (cmpy.machines.algorithms.mealycompose.VectorMealyHMM method) markov_order() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) (in module cmpy.machines.algorithms.emmo) MarkovChain (class in cmpy.machines.mealyhmm) MaxClustersExceeded MaxIterationsExceeded MealyHMM (class in cmpy.machines.mealyhmm) MealyHMM_from_DFA() (in module cmpy.machines.algorithms.convert) MealyHMM_from_MooreHMM() (in module cmpy.machines.algorithms.convert) MealyTransducer (class in cmpy.machines.mealytransducer) memoize() (in module cmpy.util.memoize) memoize_method() (in module cmpy.util.memoize) Memory (class in cmpy.infotheory.memory) merge_mixedstates() (in module cmpy.machines.algorithms.mealyeM) merge_nodes() (cmpy.machines.mealyhmm.MealyHMM method) metric() (in module cmpy.simplex.aitchison) minimize() (cmpy.machines.dfa.DFA method)

minimize_hopcroft() (in module cmpy.machines.algorithms.dfaminimize) minimize_unifilar() (cmpy.machines.mealyhmm.MealyHMM method) minsync_words() (cmpy.machines.mealyhmm.MealyHMM method) minsync_words_iter() (in module cmpy.machines.algorithms.mealysw) Misiurewicz() (in module cmpy.machines.processes.misiurewicz) MisiurewiczSimplified() (in module cmpy.machines.processes.misiurewicz) MisiurewiczUniform() (in module cmpy.machines.processes.misiurewicz) MixedState (class in cmpy.machines.algorithms.mealyms) mixedstate_entropy() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) Model (class in cmpy.infotheory.memory) MooreHMM (class in cmpy.machines.moorehmm) (class in cmpy.machines.simplemoorehmm) MooreHMM_from_MealyHMM() (in module cmpy.machines.algorithms.convert) MSPBuilder (in module cmpy.machines.algorithms.mealyms) MSPBuilderBase (class in cmpy.machines.algorithms.mealyms) MSPBuilderDict (class in cmpy.machines.algorithms.mealyms) mult_probs() (cmpy.infotheory.distributions.LogDistribution static method) (cmpy.infotheory.distributions.SymbolicDistribution static method) Multiple3() (in module cmpy.machines.processes.multiple) Multiple4() (in module cmpy.machines.processes.multiple) MultipleN() (in module cmpy.machines.processes.multiple) MultipleRecurrentComponents mutual_information() (in module cmpy.information.information) (in module cmpy.infotheory.infotheory) mutual_information_from_conditional() (in module cmpy.information.information) mutual_information_log() (in module cmpy.infotheory.infotheory) mutual_information_string() (in module cmpy.latex.blockentropy) mutual_information_symbolic() (in module cmpy.infotheory.infotheory)

N

N() (in module cmpy.orderlygen.old.icdfa) n_f() (in module cmpy.orderlygen.old.icdfa) (in module cmpy.orderlygen.pyicdfa) N_matrix (class in cmpy.orderlygen.pyicdfa) n_r() (in module cmpy.orderlygen.old.icdfa) (in module cmpy.orderlygen.pyicdfa) Nemo() (in module cmpy.machines.processes.nemo) NemoRedundant() (in module cmpy.machines.processes.nemo) new_wrapper() (in module cmpy.external.decorator) next (cmpy.util.combinatorics.combinations attribute) (cmpy.util.combinatorics.permutations attribute) (cmpy.util.combinatorics.product attribute) next() (cmpy.util.parsetree.BFS method) (cmpy.util.parsetree.DFS method) next_flags() (in module cmpy.orderlygen.old.generator) next_icdfa() (in module cmpy.orderlygen.old.generator) next_word() (cmpy.util.parsetree.BFS method) (cmpy.util.parsetree.DFS method) node_attr_aliases (cmpy.machines.base.BaseMachine attribute) (cmpy.machines.dfa.DFA attribute) (cmpy.machines.mealyhmm.MealyHMM attribute) (cmpy.machines.moorehmm.MooreHMM attribute) (cmpy.machines.simplemoorehmm.MooreHMM attribute) (cmpy.machines.transducer.Transducer attribute) node_attr_required (cmpy.machines.base.BaseMachine attribute) (cmpy.machines.dfa.DFA attribute) (cmpy.machines.mealyhmm.MealyHMM attribute) (cmpy.machines.moorehmm.MooreHMM attribute) (cmpy.machines.simplemoorehmm.MooreHMM attribute) (cmpy.machines.transducer.Transducer attribute) node_transition_matrix() (cmpy.machines.stochasticmachine.StochasticMachine method) NoisyPeriod2() (in module cmpy.machines.processes.noisyp2)

NonunifilarException NonunifilarGoldenMean() (in module cmpy.machines.processes.goldenmean) norm() (in module cmpy.simplex.aitchison) normal_unitsum() (in module cmpy.simplex.sampling) normalize() (cmpy.infotheory.distributions.Distribution method) (cmpy.infotheory.distributions.GeneralizedDistribution method) (cmpy.infotheory.distributions.LogDistribution method) (cmpy.infotheory.distributions.SymbolicDistribution method) normalize_conditional_distribution() (in module cmpy.information.misc) normalize_distribution() (in module cmpy.information.misc) NotAccessibleException NotImplementedTest() (in module cmpy.testing.misc) NRPS() (in module cmpy.machines.processes.nrps) num_atoms() (in module cmpy.infotheory.quantities) num_entropies() (in module cmpy.infotheory.quantities) num_graphs() (in module cmpy.orderlygen.old.read1) num_graphs__brute() (in module cmpy.orderlygen.old.read1) num_nodes() (in module cmpy.orderlygen.old.read1)

O

OCIWaveDetected Odd() (in module cmpy.machines.processes.odd) OddGHMM() (in module cmpy.machines.processes.odd) oracular_information() (cmpy.machines.algorithms.mealycmech.CMechQuantities method)

OrderlyGenerator (class in cmpy.orderlygen.old.read1) Oscillator() (in module cmpy.machines.processes.rotation) output_alphabet() (cmpy.machines.mealytransducer.MealyTransducer method) (cmpy.machines.transducer.Transducer method) output_machine() (cmpy.machines.mealytransducer.MealyTransducer method) (cmpy.machines.transducer.Transducer method)

P

Parity() (in module cmpy.machines.processes.transducers) parse() (in module cmpy.latex.blockentropy) parse_version() (in module cmpy.external.pkg_resources) partial (class in cmpy.external.decorator) partition_hopcroft() (in module cmpy.machines.algorithms.dfaminimize) partition_set() (in module cmpy.util.misc) period() (cmpy.machines.mealyhmm.MealyHMM method) Period() (in module cmpy.machines.processes.period) Period1() (in module cmpy.machines.processes.period) Period12() (in module cmpy.machines.processes.period) Period16() (in module cmpy.machines.processes.period) Period2() (in module cmpy.machines.processes.period) Period4() (in module cmpy.machines.processes.period) Period7() (in module cmpy.machines.processes.period) Period8() (in module cmpy.machines.processes.period) Periodic() (in module cmpy.machines.processes.period) periodic_word_iter() (in module cmpy.util.period) permutations (class in cmpy.util.combinatorics) permute() (in module cmpy.orderlygen.old.read1) perplexity() (in module cmpy.infotheory.infotheory) perplexity_log() (in module cmpy.infotheory.infotheory) perplexity_symbolic() (in module cmpy.infotheory.infotheory) perturb_distribution() (in module cmpy.information.information) perturbation() (in module cmpy.simplex.aitchison)

power() (in module cmpy.simplex.aitchison) powerset() (in module cmpy.machines.algorithms.mealypm) (in module cmpy.util.combinatorics) predictability_gain() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) predictive_information() (cmpy.infotheory.memory.Memory method) predictive_information_rate() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) predictive_information_rate_exact() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) predictive_state_information() (cmpy.infotheory.memory.Memory method) prepare_bprob_array() (in module cmpy.machines.algorithms.mealybprob) prepare_fprob_array() (in module cmpy.machines.algorithms.mealyfprob) pretty() (cmpy.infotheory.events.Event method) (cmpy.infotheory.events.JointEvent method) print_atoms() (in module cmpy.infotheory.quantities) print_entropies() (in module cmpy.infotheory.quantities) print_mutual_informations() (in module cmpy.infotheory.quantities) priority() (cmpy.orderlygen.old.read1.Graph method) (in module cmpy.orderlygen.old.read1) probabilities() (cmpy.machines.hmm.HMM method) probabilities_iter() (cmpy.machines.hmm.HMM method) (cmpy.machines.mealyhmm.MealyHMM method) probability() (cmpy.machines.hmm.HMM method) (cmpy.machines.mealyhmm.MealyHMM method) probability__numpy() (in module cmpy.machines.algorithms.mealyfprob) probability__numpy2() (in module cmpy.machines.algorithms.mealyfprob) probabilize() (in module cmpy.information.information) product (class in cmpy.util.combinatorics) propagate_mixedstates() (in module cmpy.machines.algorithms.mealyms) Property() (in module cmpy.util.misc)

R

randint() (in module cmpy.machines.algorithms.mealytfa) random_unitsum() (in module cmpy.math.sampling) random_zerosum() (in module cmpy.math.sampling) RandomBiasedCoin() (in module cmpy.machines.processes.coin) RandomEven() (in module cmpy.machines.processes.even) RandomGoldenMean() (in module cmpy.machines.processes.goldenmean) randomize_current_distribution() (cmpy.machines.stochasticmachine.StochasticMachine method) randomize_current_node() (cmpy.machines.stochasticmachine.StochasticMachine method) RCT() (in module cmpy.machines.processes.transducers) reassign_edge_probabilities() (in module cmpy.machines.transform) recurrent_components() (cmpy.machines.stochasticmachine.StochasticMachine method) recurrent_nodes() (cmpy.machines.stochasticmachine.StochasticMachine method) RecurrentEpsilonMachine (class in cmpy.machines.epsilonmachine) RecurrentFoundException reduce() (cmpy.machines.dfa.DFA method) (cmpy.machines.epsilonmachine.EpsilonMachine method) (cmpy.machines.epsilonmachine.RecurrentEpsilonMachine method) (cmpy.machines.stochasticmachine.StochasticMachine method) reindexed() (cmpy.infotheory.events.JointEvent method) relabel_nodes() (cmpy.machines.stochasticmachine.StochasticMachine method) relabel_symbols() (cmpy.machines.dfa.DFA method) (cmpy.machines.mealyhmm.MealyHMM method) relative_entropy() (in module cmpy.information.information) (in module cmpy.infotheory.infotheory) relative_entropy_log() (in module cmpy.infotheory.infotheory) relative_entropy_symbolic() (in module cmpy.infotheory.infotheory) remove_accept_node() (cmpy.machines.dfa.DFA method) remove_unreachable() (in module cmpy.machines.algorithms.dfaminimize) remove_unzipped() (in module cmpy.machines.libraries.tremup.misc) renormalize() (cmpy.information.misc.DistributionDict method)

renormalize_edges() (cmpy.machines.mealytransducer.MealyTransducer method) (cmpy.machines.stochasticmachine.StochasticMachine method) renyi_entropy() (in module cmpy.infotheory.infotheory) renyi_entropy_log() (in module cmpy.infotheory.infotheory) renyi_entropy_symbolic() (in module cmpy.infotheory.infotheory) renyi_relative_entropy() (in module cmpy.infotheory.infotheory) renyi_relative_entropy_log() (in module cmpy.infotheory.infotheory) renyi_relative_entropy_symbolic() (in module cmpy.infotheory.infotheory) replace() (in module cmpy.external.pkg_resources) require_keys() (in module cmpy.util.misc) requires() (in module cmpy.testing.misc) reset() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) (in module cmpy.orderlygen.old.generator) reset_params() (in module cmpy.params) residual_entropy_rate() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) residual_entropy_rate_exact() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) RestrictedGM() (in module cmpy.machines.processes.goldenmean) reverse() (cmpy.machines.dfa.DFA method) (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) (cmpy.machines.hmm.HMM method) reverse_words() (cmpy.machines.algorithms.mealyms.MSPBuilderBase method) revlen() (cmpy.util.subdict.indexdict method) RIP() (in module cmpy.machines.processes.rip) RkGM() (in module cmpy.machines.processes.goldenmean) Rn1C() (in module cmpy.machines.processes.rn1c) Rn1N() (in module cmpy.machines.processes.rn1n) Rotation() (in module cmpy.machines.processes.rotation) RRX() (in module cmpy.machines.processes.rrx) RRXRO() (in module cmpy.machines.processes.rrxro)

S

sample_discrete() (in module cmpy.math.sampling) segment_axis() (in module cmpy.util.segmentaxis) (in module cmpy.util.sequences) selfkey_defaultdict (class in cmpy.util.kddict) set_accept_nodes() (cmpy.machines.dfa.DFA method) set_current_distribution() (cmpy.machines.stochasticmachine.StochasticMachine method) set_current_node() (cmpy.machines.stochasticmachine.StochasticMachine method) set_last_icdfa() (in module cmpy.orderlygen.old.generator) set_name() (cmpy.machines.base.BaseMachine method) set_start_distribution() (cmpy.machines.stochasticmachine.StochasticMachine method) set_start_node() (cmpy.machines.base.BaseMachine method) (cmpy.machines.dfa.DFA method) set_sync_mode() (cmpy.machines.stochasticmachine.StochasticMachine method) setalias() (cmpy.util.subdict.aliasdict1 method) (cmpy.util.subdict.aliasdict2 method) setcomplexity() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) setUp() (cmpy.infotheory.tests.test_events.TestBaseEvent method) (cmpy.machines.tests.test_base.TestBaseMachine method) (cmpy.machines.tests.test_epsilonmachine.TestMealyHMM method) (cmpy.machines.tests.test_hmm.TestHMM method) (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) (cmpy.machines.tests.test_moorehmm.TestMealyHMM method) setupClass() (cmpy.infotheory.tests.test_distributions.TestSymbolic class method) sigma_algebra() (in module cmpy.math.sigmaalgebra) simple_bfs() (in module cmpy.util.parsetree) simplex_gridsample() (in module cmpy.simplex.grid) SlidingNOR() (in module cmpy.machines.processes.transducers) slots() (in module cmpy.util.combinatorics) SNS() (in module cmpy.machines.processes.sns) state_entropy() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) stateblock_entropy() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) stateblock_entropy_asymptote() (cmpy.machines.algorithms.mealycmech.CMechQuantities method)

stateblock_entropy_integral() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) stationary_distribution() (cmpy.machines.algorithms.mealyms.BidirectionalMachine method) (cmpy.machines.mealytransducer.MealyTransducer method) (cmpy.machines.stochasticmachine.StochasticMachine method) (in module cmpy.math.misc) stationary_entropy() (cmpy.machines.mealytransducer.MealyTransducer method) (cmpy.machines.stochasticmachine.StochasticMachine method) statistical_complexity() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) StochasticMachine (class in cmpy.machines.stochasticmachine) StretchedGM() (in module cmpy.machines.processes.goldenmean) string_to_array() (in module cmpy.orderlygen.old.generator) string_to_dfa() (in module cmpy.orderlygen.old.generator) string_to_flag() (in module cmpy.orderlygen.old.icdfa) (in module cmpy.orderlygen.pyicdfa) sub() (in module cmpy.simplex.aitchison) subcomposition() (in module cmpy.simplex.aitchison) subgraph() (cmpy.machines.stochasticmachine.StochasticMachine method) subwords_iter() (in module cmpy.util.combinatorics) sum_probabilities() (in module cmpy.math.misc) support() (cmpy.machines.mealyhmm.MealyHMM method) symbol() (cmpy.machines.hmm.HMM method) symbol_topology() (cmpy.machines.mealyhmm.MealyHMM method) SymbolicDistribution (class in cmpy.infotheory.distributions) symbols() (cmpy.machines.hmm.HMM method) (cmpy.machines.mealyhmm.MealyHMM method) symbols_iter() (cmpy.machines.hmm.HMM method) (cmpy.machines.mealyhmm.MealyHMM method) symmetric_relative_entropy() (in module cmpy.information.information) synchronization_information() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) synchronizationL() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) synchronize() (cmpy.machines.stochasticmachine.StochasticMachine method)

T

take() (in module cmpy.util.sequences) test_add_edge__cmpy() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) (cmpy.machines.tests.test_moorehmm.TestMealyHMM method) test_add_edges_from__cmpy() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) (cmpy.machines.tests.test_moorehmm.TestMealyHMM method) test_add_node__cmpy() (cmpy.machines.tests.test_base.TestBaseMachine method) test_add_nodes_from__cmpy() (cmpy.machines.tests.test_base.TestBaseMachine method) test_aliasdict1() (in module cmpy.util.tests.test_subdict) test_aliasdict2() (in module cmpy.util.tests.test_subdict) test_aliased_attrdict() (in module cmpy.machines.tests.test_base) test_alphabet() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_alr() (in module cmpy.simplex.tests.test_aitchison) test_alr_inv() (in module cmpy.simplex.tests.test_aitchison) test_array() (in module cmpy.infotheory.tests.test_conditional_distributions) (in module cmpy.infotheory.tests.test_distributions) test_basis() (in module cmpy.simplex.tests.test_aitchison) test_basis2() (in module cmpy.simplex.tests.test_aitchison) test_block_entropies_markov() (in module cmpy.machines.algorithms.tests.test_mealybe) test_block_entropy() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_buildeM_reduce() (in module cmpy.machines.tests.test_epsilonmachine) test_butterfly() (in module cmpy.machines.algorithms.tests.test_emco) (in module cmpy.machines.algorithms.tests.test_emmo) (in module cmpy.machines.algorithms.tests.test_mealysw) test_causal_state() (cmpy.machines.tests.test_epsilonmachine.TestMealyHMM method) test_closure() (in module cmpy.simplex.tests.test_aitchison) test_closure_invariance() (in module cmpy.simplex.tests.test_aitchison) test_clr() (in module cmpy.simplex.tests.test_aitchison) test_clr_inv() (in module cmpy.simplex.tests.test_aitchison) test_clr_prop() (in module cmpy.simplex.tests.test_aitchison) test_coalesce_two() (in module cmpy.infotheory.tests.test_distributions) test_coalesce_twotwo() (in module cmpy.infotheory.tests.test_distributions) test_coinformation() (in module cmpy.infotheory.tests.test_dists_infotheory) test_conditional_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) test_conditional_entropy_log() (in module cmpy.infotheory.tests.test_dists_infotheory) test_conditional_entropy_symbolic() (in module cmpy.infotheory.tests.test_dists_infotheory) test_conditioning_first() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_second() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_second_clean() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_third() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_two_first() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_two_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_two_second() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_two_second_clean() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_two_third() (in module cmpy.infotheory.tests.test_distributions) test_conditioning_two_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_copy() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_cross_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) test_cross_entropy_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) test_cross_entropy_infs() (in module cmpy.infotheory.tests.test_dists_infotheory) test_cross_entropy_log() (in module cmpy.infotheory.tests.test_dists_infotheory) test_cross_entropy_symbolic() (in module cmpy.infotheory.tests.test_dists_infotheory) test_cryptic_order() (in module cmpy.machines.tests.test_epsilonmachine) test_crypticity() (in module cmpy.machines.tests.test_epsilonmachine) test_current_distribution() (cmpy.machines.tests.test_hmm.TestHMM method) test_current_node() (cmpy.machines.tests.test_hmm.TestHMM method) test_delitem() (in module cmpy.infotheory.tests.test_distributions) test_distributions_iter() (cmpy.machines.tests.test_hmm.TestHMM method) (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_edge_label() (in module cmpy.machines.tests.test_label) test_emission_matrix() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) (in module cmpy.infotheory.tests.test_information) test_entropy_log() (in module cmpy.infotheory.tests.test_information) test_entropy_log_with_neginfs() (in module cmpy.infotheory.tests.test_information) test_entropy_rate() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) (in module cmpy.machines.tests.test_epsilonmachine) test_entropy_symbolic() (in module cmpy.infotheory.tests.test_information) test_entropy_with_zeros() (in module cmpy.infotheory.tests.test_information) test_equal1() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_equal2() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_equal3() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_equal4() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_equiv1() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_equiv2() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_equiv_dist() (in module cmpy.simplex.tests.test_aitchison) test_equiv_inner1() (in module cmpy.simplex.tests.test_aitchison) test_equiv_inner2() (in module cmpy.simplex.tests.test_aitchison) test_equiv_norm() (in module cmpy.simplex.tests.test_aitchison) test_even() (in module cmpy.machines.algorithms.tests.test_emco) (in module cmpy.machines.algorithms.tests.test_emmo) (in module cmpy.machines.algorithms.tests.test_mealysw) test_exact() (in module cmpy.machines.tests.test_epsilonmachine) test_excess_entropy() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) (in module cmpy.machines.tests.test_epsilonmachine) test_fromlogs() (in module cmpy.infotheory.tests.test_distributions) test_getitems() (in module cmpy.infotheory.tests.test_distributions) test_gm() (in module cmpy.machines.algorithms.tests.test_mealysw) test_goldenmean() (in module cmpy.machines.algorithms.tests.test_emco) (in module cmpy.machines.algorithms.tests.test_emmo) test_gt() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_gteq() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_hash() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_ilr() (in module cmpy.simplex.tests.test_aitchison) test_ilr_inv() (in module cmpy.simplex.tests.test_aitchison) test_indexdict() (in module cmpy.util.tests.test_subdict) test_init() (in module cmpy.infotheory.tests.test_distributions) test_init_nojoint() (in module cmpy.infotheory.tests.test_distributions) test_init_with_ints() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_init_with_mask1() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_init_with_mask2() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_init_with_mask3() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_init_with_mask4() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_init_with_wc() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_inner() (in module cmpy.simplex.tests.test_aitchison) test_interaction_information() (in module cmpy.infotheory.tests.test_dists_infotheory) test_invertmask() (cmpy.infotheory.tests.test_events.TestEvent method) (cmpy.infotheory.tests.test_events.TestJointEvent method) test_is_counifilar() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_is_forbidden() (in module cmpy.math.tests.test_misc) test_is_irreducible() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_is_minimal() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_is_node_isomorphic() (in module cmpy.machines.algorithms.tests.test_mealyiso) test_is_periodic() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_is_sigma_algebra() (in module cmpy.math.tests.test_sigmaalgebra) test_is_strictly_sofic() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_is_unifilar() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_isomorphic() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_iter() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_iter1() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_iter2() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_labeled_transition_matrices() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_len1() (cmpy.infotheory.tests.test_events.TestEvent method) (cmpy.infotheory.tests.test_events.TestJointEvent method) test_log_array() (in module cmpy.infotheory.tests.test_conditional_distributions) test_log_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) test_lt() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_lteq() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_marginal_first() (in module cmpy.infotheory.tests.test_distributions) test_marginal_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_first() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_second() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_second_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_third() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_two_first() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_two_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_two_second() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_two_second_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_two_third() (in module cmpy.infotheory.tests.test_distributions) test_marginal_from_event_two_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_second() (in module cmpy.infotheory.tests.test_distributions) test_marginal_second_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_third() (in module cmpy.infotheory.tests.test_distributions) test_marginal_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_two_first() (in module cmpy.infotheory.tests.test_distributions) test_marginal_two_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_two_second() (in module cmpy.infotheory.tests.test_distributions) test_marginal_two_second_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginal_two_third() (in module cmpy.infotheory.tests.test_distributions) test_marginal_two_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_first() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_second() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_second_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_third() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_two_first() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_two_first_clean() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_two_second() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_two_second_clean() (in module cmpy.infotheory.tests.test_distributions)

test_marginalize_two_third() (in module cmpy.infotheory.tests.test_distributions) test_marginalize_two_third_clean() (in module cmpy.infotheory.tests.test_distributions) test_markov_order() (in module cmpy.machines.tests.test_epsilonmachine) test_maskclean1() (cmpy.infotheory.tests.test_events.TestEvent method) (cmpy.infotheory.tests.test_events.TestJointEvent method) test_minimal() (in module cmpy.machines.tests.test_epsilonmachine) test_minimal_unifilar() (in module cmpy.machines.tests.test_epsilonmachine) test_mutual_information_nonzero() (in module cmpy.infotheory.tests.test_dists_infotheory) test_mutual_information_symmetry() (in module cmpy.infotheory.tests.test_dists_infotheory) test_mutual_information_zero() (in module cmpy.infotheory.tests.test_dists_infotheory) test_nemo() (in module cmpy.machines.algorithms.tests.test_emco) (in module cmpy.machines.algorithms.tests.test_emmo) test_node_transition_matrix() (cmpy.machines.tests.test_hmm.TestHMM method) test_nojoint() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_nonjoint() (in module cmpy.infotheory.tests.test_distributions) test_normalize() (in module cmpy.infotheory.tests.test_distributions) test_notequal() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_perplexity() (in module cmpy.infotheory.tests.test_dists_infotheory) test_perplexity_log() (in module cmpy.infotheory.tests.test_dists_infotheory) test_perplexity_symbolic() (in module cmpy.infotheory.tests.test_dists_infotheory) test_perturbation() (in module cmpy.simplex.tests.test_aitchison) test_power() (in module cmpy.simplex.tests.test_aitchison) test_pretty() (cmpy.infotheory.tests.test_events.TestEvent method) (cmpy.infotheory.tests.test_events.TestJointEvent method) test_pretty2() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_probabilities_iter__array() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_probabilities_iter__machine() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_probability1() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_probability2() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_randomize_current_node() (in module cmpy.machines.tests.test_stochasticmachine) test_raw() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_reduce() (cmpy.machines.tests.test_epsilonmachine.TestMealyHMM method) (cmpy.machines.tests.test_hmm.TestHMM method) test_reduced() (cmpy.infotheory.tests.test_events.TestEvent method) (cmpy.infotheory.tests.test_events.TestJointEvent method) test_reindex1() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_reindex2() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_reindex3() (cmpy.infotheory.tests.test_events.TestJointEvent method) test_relative_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) (in module cmpy.infotheory.tests.test_information) test_relative_entropy_infs() (in module cmpy.infotheory.tests.test_dists_infotheory) test_relative_entropy_log() (in module cmpy.infotheory.tests.test_dists_infotheory) (in module cmpy.infotheory.tests.test_information) test_relative_entropy_symbolic() (in module cmpy.infotheory.tests.test_dists_infotheory) test_relative_entropy_zero() (in module cmpy.infotheory.tests.test_dists_infotheory) test_renyi_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) test_renyi_entropy_log() (in module cmpy.infotheory.tests.test_dists_infotheory) test_renyi_entropy_symbolic() (in module cmpy.infotheory.tests.test_dists_infotheory) test_repr() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_resolve_attr() (in module cmpy.machines.tests.test_base) test_reverse() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_rkgm() (in module cmpy.machines.algorithms.tests.test_emco) (in module cmpy.machines.algorithms.tests.test_emmo) test_setitem() (in module cmpy.infotheory.tests.test_distributions) test_sets2matrix() (in module cmpy.math.tests.test_sigmaalgebra) test_sigma_algebra() (in module cmpy.math.tests.test_sigmaalgebra) test_start_node() (cmpy.machines.tests.test_hmm.TestHMM method) test_stationary_distribution() (cmpy.machines.tests.test_hmm.TestHMM method) (in module cmpy.math.tests.test_misc) test_statistical_complexity() (in module cmpy.machines.tests.test_epsilonmachine) test_str() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_sym_array() (in module cmpy.infotheory.tests.test_conditional_distributions) test_symbol_topology() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_symbolic_conditional_first() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_first_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_second() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_second_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_third() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_third_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_two_first() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_two_first_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_two_second() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_two_second_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_two_third() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_conditional_two_third_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_entropy() (in module cmpy.infotheory.tests.test_dists_infotheory) test_symbolic_marginal_first() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_first_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_second() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_second_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_third() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_third_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_two_first() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_two_first_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_two_second() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_two_second_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_two_third() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_marginal_two_third_clean() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_to_dist() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbolic_to_logdist() (cmpy.infotheory.tests.test_distributions.TestSymbolic method) test_symbols_iter() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_sync_mode1() (cmpy.machines.tests.test_hmm.TestHMM method) test_sync_mode2() (cmpy.machines.tests.test_hmm.TestHMM method) test_sync_mode3() (cmpy.machines.tests.test_hmm.TestHMM method) test_sync_mode4() (cmpy.machines.tests.test_hmm.TestHMM method) test_threeven() (in module cmpy.machines.algorithms.tests.test_mealysw) test_tologs() (in module cmpy.infotheory.tests.test_distributions) test_toMooreHMM() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_topological_entropy_rate() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) test_total_correlation() (in module cmpy.infotheory.tests.test_dists_infotheory) test_unifilar() (in module cmpy.machines.tests.test_epsilonmachine) test_unique_columns() (in module cmpy.math.tests.test_sigmaalgebra) test_unmask() (cmpy.infotheory.tests.test_events.TestBaseEvent method) test_validate() (in module cmpy.infotheory.tests.test_distributions) test_validate_and_convert() (in module cmpy.infotheory.tests.test_convert) test_validate_fail() (in module cmpy.infotheory.tests.test_distributions) test_validate_generalized_distribution() (in module cmpy.infotheory.tests.test_distributions) test_validate_log() (in module cmpy.infotheory.tests.test_distributions) test_validate_log_fail() (in module cmpy.infotheory.tests.test_distributions) test_validate_non_probs() (in module cmpy.infotheory.tests.test_distributions) test_word_transition_matrix() (cmpy.machines.tests.test_mealyhmm.TestMealyHMM method) TestBaseEvent (class in cmpy.infotheory.tests.test_events) TestBaseMachine (class in cmpy.machines.tests.test_base) TestEvent (class in cmpy.infotheory.tests.test_events) TestHMM (class in cmpy.machines.tests.test_hmm) TestJointEvent (class in cmpy.infotheory.tests.test_events) TestMealyHMM (class in cmpy.machines.tests.test_epsilonmachine) (class in cmpy.machines.tests.test_mealyhmm) (class in cmpy.machines.tests.test_moorehmm) TestSymbolic (class in cmpy.infotheory.tests.test_distributions) TF_induction() (in module cmpy.machines.algorithms.mealytfa) TF_initialization_PC() (in module cmpy.machines.algorithms.mealytfa) TF_initialization_prob() (in module cmpy.machines.algorithms.mealytfa) TF_initialization_TD() (in module cmpy.machines.algorithms.mealytfa) ThreeHundred() (in module cmpy.machines.processes.threehundred) ThreEven() (in module cmpy.machines.processes.even) ThreEvenOdd() (in module cmpy.machines.processes.odd) to_cdist() (cmpy.infotheory.conditional_distributions.ConditionalLogDistribution method) to_dense() (cmpy.information.misc.DistributionDict method) to_dist() (cmpy.infotheory.distributions.LogDistribution method) (cmpy.infotheory.distributions.SymbolicDistribution method) to_dot() (cmpy.machines.base.BaseMachine method) (in module cmpy.drawing.graphviz) to_dot__BaseMachine() (in module cmpy.drawing.graphviz) to_dot__MealyHMM() (in module cmpy.drawing.graphviz) to_dot__MooreHMM() (in module cmpy.drawing.graphviz) to_dot__postcommon() (in module cmpy.drawing.graphviz) to_dot__precommon() (in module cmpy.drawing.graphviz) to_logcdist() (cmpy.infotheory.conditional_distributions.ConditionalDistribution method) to_logdist() (cmpy.infotheory.distributions.Distribution method) (cmpy.infotheory.distributions.SymbolicDistribution method) to_logmixedstate() (cmpy.machines.algorithms.mealyms.MixedState method) to_mealyhmm() (cmpy.machines.epsilonmachine.BaseEpsilonMachine method) to_mixedstate() (cmpy.machines.algorithms.mealyms.LogMixedState method) to_recurrent_eM() (cmpy.machines.mealyhmm.MealyHMM method) to_string() (cmpy.machines.mealyhmm.MealyHMM method) toMooreHMM() (cmpy.machines.mealyhmm.MealyHMM method) topological_eMs() (in module cmpy.machines.libraries.tremup.haskell) topological_entropy_rate() (cmpy.machines.mealyhmm.MealyHMM method) (cmpy.machines.stochasticmachine.StochasticMachine method) total_predictability() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) transduce_generator() (cmpy.machines.mealytransducer.MealyTransducer method) transduce_symbols_iter() (cmpy.machines.mealytransducer.MealyTransducer method) transduce_word() (cmpy.machines.mealytransducer.MealyTransducer method) Transducer (class in cmpy.machines.transducer) TransducerError transient_information() (cmpy.machines.algorithms.mealycmech.CMechQuantities method) trim() (cmpy.infotheory.distributions.SymbolicDistribution method) tsallis_entropy() (in module cmpy.infotheory.infotheory) tsallis_entropy_log() (in module cmpy.infotheory.infotheory) tsallis_entropy_symbolic() (in module cmpy.infotheory.infotheory) tunnel() (in module cmpy.infotheory.conditional_distributions) TwoPerm() (in module cmpy.machines.processes.transducers) TypeClass (class in cmpy.machines.algorithms.typeclass)

U

UncoupledGMPs() (in module cmpy.machines.processes.goldenmean) UnexpectedHMM uniform_mealyhmm() (in module cmpy.machines.processes.random) uniform_mealymc() (in module cmpy.machines.processes.random)

uniform_unitsum() (in module cmpy.simplex.sampling) uniform_zerosum() (in module cmpy.simplex.sampling) unzip_files() (in module cmpy.machines.libraries.tremup.misc) update() (cmpy.external.decorator.FunctionMaker method)

V

validate() (cmpy.infotheory.distributions.Distribution method) (cmpy.infotheory.distributions.GeneralizedDistribution method) (cmpy.infotheory.distributions.LogDistribution method) (cmpy.infotheory.distributions.SymbolicDistribution method) validate_and_convert() (in module cmpy.infotheory.convert) validate_conditional_distribution() (in module cmpy.information.misc) validate_distribution() (in module cmpy.information.misc) validate_node_distribution() (in module cmpy.machines.misc) validate_node_ordering() (in module cmpy.machines.misc)

values_using_table() (cmpy.orderlygen.pyicdfa.N_matrix method) vector_iter() (in module cmpy.orderlygen.old.read1) vector_iter__brute() (in module cmpy.orderlygen.old.read1) vector_length() (in module cmpy.orderlygen.old.read1) VectorMealyHMM (class in cmpy.machines.algorithms.mealycompose) VectorMealyTransducer (class in cmpy.machines.algorithms.mealycompose)

W

WaitTimeExceeded window_iter() (in module cmpy.util.sequences) windowed() (in module cmpy.util.sequences) word_distribution_from_path() (cmpy.machines.mealyhmm.MealyHMM method)

word_periodicity() (in module cmpy.util.period) word_transition_matrix() (cmpy.machines.mealyhmm.MealyHMM method) words_iter() (in module cmpy.util.combinatorics) write_attrs() (in module cmpy.drawing.graphviz)

X

xzip() (in module cmpy.util.misc)

Z

zip_files() (in module cmpy.machines.libraries.tremup.misc)